PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC55_p12
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 149aa    MW: 16641.9 Da    PI: 8.2001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC55_p12genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-0537761054
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               ++R d+  ++++ L++++ +      +K + a++L+ A +YI  L
  RrC55_p12 37 KQRKDKAGERISALQQIVSPY-----GKTDTASVLQDAFNYIEFL 76
               788899999*********999.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.6E-92791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.9952776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-113689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-43781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEFSREAGMM MENKRSVCSL EESSIKRHKS DLSFTSKQRK DKAGERISAL QQIVSPYGKT  60
DTASVLQDAF NYIEFLHEQV KVLSAPYLQT MTAATQEELE LYSLRNRGLC LVPMEYTAGV  120
AQSNGADIWA PVKTPPSPAF GVKSQSPFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760401e-154AJ576040.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-alpha gene).
GenBankAK2302571e-154AK230257.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-23-B19.
GenBankAY0878581e-154AY087858.1 Arabidopsis thaliana clone 3900 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111035.11e-104PREDICTED: transcription factor bHLH113-like isoform X2
RefseqXP_009111036.11e-104PREDICTED: transcription factor bHLH113-like isoform X2
RefseqXP_009111037.11e-104PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ9LT673e-31BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A078JM071e-103A0A078JM07_BRANA; BnaAnng25330D protein
TrEMBLA0A0D3DJ231e-102A0A0D3DJ23_BRAOL; Uncharacterized protein
STRINGBra030622.1-P3e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-96bHLH family protein